Capsid-mediated chromatin state of the AAV vector genome controls host species range
… of vector copies in DNase I treated vs untreated nuclear … between species by treating
transduced cells with DNase I prior … from degradation in the +DNase I condition in both species. …
transduced cells with DNase I prior … from degradation in the +DNase I condition in both species. …
GTP‐dependent regulation of heterochromatin fluctuations at subtelomeric regions in Saccharomyces cerevisiae
T Ayano, T Yokosawa, M Oki - Genes to Cells, 2024 - Wiley Online Library
… regulating this heterogeneity is the chromatin state in each cell. … Using budding yeast, we
have developed a system to track … The primers used for real-time PCR are listed in Table 2. …
have developed a system to track … The primers used for real-time PCR are listed in Table 2. …
[PDF][PDF] Mapping the effects of genetic variation on chromatin state and gene expression reveals loci that control ground state pluripotency
… track shows a composite DO mESC ATAC-seq track (median normalized sequencing depth
across all DO mESC samples). The lower tracks show published DNaseI … 7 Real-Time PCR …
across all DO mESC samples). The lower tracks show published DNaseI … 7 Real-Time PCR …
m6A RNA methylation regulates the fate of endogenous retroviruses
T Chelmicki, E Roger, A Teissandier, M Dura… - Nature, 2021 - nature.com
… By monitoring chromatin states and mRNA stability upon … Reverse transcription and
real-time quantitative PCR were … Genomic DNA was removed by in solution DNaseI treatment (…
real-time quantitative PCR were … Genomic DNA was removed by in solution DNaseI treatment (…
[HTML][HTML] The AAV capsid can influence the epigenetic marking of rAAV delivered episomal genomes in a species dependent manner
A Gonzalez-Sandoval, K Pekrun, S Tsuji… - Nature …, 2023 - nature.com
… Programming viral chromatin states by capsid design may … between species by treating
transduced cells with DNAse I prior to … in the same manner as the nuclei were used as control. …
transduced cells with DNAse I prior to … in the same manner as the nuclei were used as control. …
Spectroscopic label-free microscopy of changes in live cell chromatin and biochemical composition in transplantable organoids
… with quantitative real-time polymerase chain reaction (PCR), is … for monitoring the differentiation
state of organoids in real time. … , exhibiting a closed chromatin state. These domains are …
state of organoids in real time. … , exhibiting a closed chromatin state. These domains are …
Mammalian PERIOD2 regulates H2A. Z incorporation in chromatin to orchestrate circadian negative feedback
… Z mimicked the Per null chromatin state and disrupted cellular … 100 nM dexamethasone, and
real-time bioluminescence was … (Iprasense) by continuous monitoring of cell cultures inside …
real-time bioluminescence was … (Iprasense) by continuous monitoring of cell cultures inside …
Cell-surface SLC nucleoside transporters and purine levels modulate BRD4-dependent chromatin states
… Real-time PCR analysis confirmed that 6-MP treatment or … To address this, we performed
stable isotope tracing … extracted using RNeasy Mini kit (Qiagen) including a DNase I …
stable isotope tracing … extracted using RNeasy Mini kit (Qiagen) including a DNase I …
Histone H3.3 lysine 9 and 27 control repressive chromatin states at cryptic cis-regulatory elements and bivalent promoters in mouse embryonic stem cells
… Monitoring proliferation over six days revealed decreased … using RNeasy Kit (Qiagen),
followed by DNase digestion … performed on a StepOnePlus Real-Time PCR machine. For each …
followed by DNase digestion … performed on a StepOnePlus Real-Time PCR machine. For each …
[HTML][HTML] The role of Smarcad1 in retroviral repression in mouse embryonic stem cells
I Bren, A Tal, C Strauss, S Schlesinger - Mobile DNA, 2024 - Springer
… independently to maintain repressive chromatin states. … on a StepOnePlus™ Real-Time
PCR system. To examine … We introduced a novel temporal dimension by monitoring changes in …
PCR system. To examine … We introduced a novel temporal dimension by monitoring changes in …